voomDDA

VoomDDA is a decision support tool developed for RNA-Sequencing datasets to assist researchers in their decisions for diagnostic biomarker discovery and classification problem. VoomDDA consists both sparse and non-sparse statistical learning classifiers adapted with voom method and provides fast, accurate and sparser classification results for RNA-Seq data.

MLSeq

MLSeq package provides several algorithms including support vector machines (SVM), bagging support vector machines (bagSVM), random forest (RF) and classification and regression trees (CART) to classify sequencing data. MLSeq can be accessed from here.

compSurv

compSurv is an easy-to-use, up-to-date, comprehensive and interactive web-based tool for survival analysis. This tool includes analysis procedures for life table, Kaplan-Meier, Cox regression, regularized Cox regression with ridge, elastic net and lasso penalties and random survival forests.

easyROC: a web-tool for ROC curve analysis

This web application creates ROC curves, calculates area under the curve (AUC) values and confidence intervals for the AUC values, and performs multiple comparisons for ROC curves in a user-friendly, up-to-date and comprehensive way. You can access easyROC webpage from here.

MVN: a web-tool for assessing multivariate normality

This application performs multivariate normality tests and graphical approaches and implements multivariate outlier detection and univariate normality of marginal distributions through plots and tests. Click for ENG and TR version. Also, click for R package version.

DDNAA: Decision support system for differential diagnosis of nontraumatic acute abdomen

This decision support tool is developed to assist physicians in their decisions to differentially diagnose of patients with acute abdomen. DDNAA includes several diagnostic tests which combine leukocyte count and d-dimer level based on statistical learning approaches. DDNAA is freely available at here.

MLViS: machine learning-based virtual screening tool

This web-tool classifies the compounds as drug-like and nondrug-like based on various trained statistical machine learning algorithms. MLViS can be accessed from here. here.

voomCLUSTER: a web-tool for clustering RNA-sequencing data

voomCLUSTER is a web application developed for RNA-Sequencing datasets to cluster. This application creates fast and truth results using voom method in clustering methods. Also, it consists different methods for grouping RNA-Seq data such as Poisson, model-based and edgeR in addition to classical clustering algorithms (k-means, k-medoid or hierarchical clustering). voomCLUSTER is a comprehensive tool, included interactive headmap and MDS graphs. voomCLUSTER can be accessed from here.

2x2: A Comprehensive Calculator for Two-Way Contingency Tables

This web-tool is a comprehensive calculator which returns hypothesis test results, associaton/risk measures, diagnostic measures, agreement measures, and similarity/dissimilarity measures for a 2-by-2 contingency table. 2x2 can be accessed from here.